IL_6QNR_320

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNR_320 not in the Motif Atlas

Geometric match to IL_4WF9_091

Geometric discrepancy: 0.1158

The information below is about IL_4WF9_091

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

6QNR|1|1H|U|2470
6QNR|1|1H|G|2471
6QNR|1|1H|A|2472
*
6QNR|1|1H|U|2506
6QNR|1|1H|G|2507

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 1K

Transfer RNA; tRNA

Chain 88

50S ribosomal protein L16

Chain I8

50S ribosomal protein L27