IL_6QNR_360

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNR_360 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0714

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

6QNR|1|14|G|1666
6QNR|1|14|G|1667
6QNR|1|14|A|1668
6QNR|1|14|A|1669
6QNR|1|14|C|1670
6QNR|1|14|U|1671
6QNR|1|14|C|1672
6QNR|1|14|U|1673
6QNR|1|14|G|1674
*
6QNR|1|14|C|1990
6QNR|1|14|U|1991
6QNR|1|14|G|1992
6QNR|1|14|U|1993
6QNR|1|14|C|1994

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L14

Chain 29

50S ribosomal protein L3