IL_6QNR_366

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCGAGC*GCGGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNR_366 not in the Motif Atlas

Geometric match to IL_8P9A_410

Geometric discrepancy: 0.3841

The information below is about IL_8P9A_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6QNR|1|14|C|2466
6QNR|1|14|C|2467
6QNR|1|14|G|2468
6QNR|1|14|A|2469
6QNR|1|14|G|2470
6QNR|1|14|C|2471
*
6QNR|1|14|G|2479
6QNR|1|14|C|2480
6QNR|1|14|G|2481
6QNR|1|14|G|2482
6QNR|1|14|C|2483
6QNR|1|14|G|2484

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 1L

Transfer RNA; tRNA

Chain 45

50S ribosomal protein L16