IL_6QNR_367

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNR_367 not in the Motif Atlas

Homologous match to IL_9DFE_102

Geometric discrepancy: 0.2943

The information below is about IL_9DFE_102

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6QNR|1|14|C|2652
6QNR|1|14|U|2653
6QNR|1|14|A|2654
6QNR|1|14|G|2655
6QNR|1|14|U|2656
6QNR|1|14|A|2657
6QNR|1|14|C|2658
*
6QNR|1|14|G|2663
6QNR|1|14|G|2664
6QNR|1|14|A|2665
6QNR|1|14|C|2666
6QNR|1|14|C|2667
6QNR|1|14|G|2668

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 59

50S ribosomal protein L6