IL_6QNR_383

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QNR_383 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0556

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

6QNR|1|1H|G|1714
6QNR|1|1H|G|1715
6QNR|1|1H|A|1716
6QNR|1|1H|A|1717
6QNR|1|1H|C|1718
6QNR|1|1H|U|1719
6QNR|1|1H|C|1720
6QNR|1|1H|U|1721
6QNR|1|1H|G|1722
*
6QNR|1|1H|C|2013
6QNR|1|1H|U|2014
6QNR|1|1H|G|2015
6QNR|1|1H|U|2016
6QNR|1|1H|C|2017

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain 68

50S ribosomal protein L14