IL_6QT0_013
3D structure
- PDB id
- 6QT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QT0_013 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.0908
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6QT0|1|A|G|404
6QT0|1|A|U|405
6QT0|1|A|G|406
6QT0|1|A|A|407
6QT0|1|A|A|408
6QT0|1|A|A|409
6QT0|1|A|U|410
*
6QT0|1|y|A|13
6QT0|1|y|C|14
6QT0|1|y|G|15
6QT0|1|y|G|16
6QT0|1|y|A|17
6QT0|1|y|U|18
6QT0|1|y|C|19
Current chains
- Chain A
- 25S rRNA
- Chain y
- 5.8S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L4-A
- Chain U
- 60S ribosomal protein L17-A
- Chain e
- 60S ribosomal protein L32
- Chain z
- Cytoplasmic 60S subunit biogenesis factor REH1
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