IL_6QT0_039

3D structure

PDB id

6QT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QT0_039 not in the Motif Atlas

Homologous match to IL_5TBW_041

Geometric discrepancy: 0.2112

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

6QT0|1|A|A|1006
6QT0|1|A|U|1007
6QT0|1|A|U|1008
6QT0|1|A|A|1009
*
6QT0|1|A|U|1041
6QT0|1|A|U|1042
6QT0|1|A|C|1043
6QT0|1|A|U|1044

Current chains

Chain A

25S rRNA

Nearby chains

Chain P

60S ribosomal protein L5

Chain q

60S ribosomal protein L10