IL_6QT0_076

3D structure

PDB id

6QT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUG*CGAG

Length

7 nucleotides

Bulged bases

6QT0|1|A|A|2324

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QT0_076 not in the Motif Atlas

Geometric match to IL_4V9K_064

Geometric discrepancy: 0.2324

The information below is about IL_4V9K_064

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

6QT0|1|A|C|2128
6QT0|1|A|U|2129
6QT0|1|A|G|2130
*
6QT0|1|A|C|2322
6QT0|1|A|G|2323
6QT0|1|A|A|2324
6QT0|1|A|G|2325

Current chains

Chain A

25S rRNA

Nearby chains

Chain m

60S ribosomal protein L43-A