IL_6QT0_120

3D structure

PDB id

6QT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCC*GUGG

Length

7 nucleotides

Bulged bases

6QT0|1|A|U|3198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QT0_120 not in the Motif Atlas

Geometric match to IL_5UNE_007

Geometric discrepancy: 0.199

The information below is about IL_5UNE_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6QT0|1|A|U|3192
6QT0|1|A|C|3193
6QT0|1|A|C|3194
*
6QT0|1|A|G|3197
6QT0|1|A|U|3198
6QT0|1|A|G|3199
6QT0|1|A|G|3200

Current chains

Chain A

25S rRNA

Nearby chains

Chain F

60S ribosomal protein L9-A

Chain J

60S ribosomal protein L16-B

Chain M

60S ribosomal protein L14-A