IL_6QT0_123

3D structure

PDB id

6QT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CG*UUG

Length

5 nucleotides

Bulged bases

6QT0|1|A|U|3382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QT0_123 not in the Motif Atlas

Homologous match to IL_8C3A_137

Geometric discrepancy: 0.3222

The information below is about IL_8C3A_137

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6QT0|1|A|C|3324
6QT0|1|A|G|3325
*
6QT0|1|A|U|3381
6QT0|1|A|U|3382
6QT0|1|A|G|3383

Current chains

Chain A

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L3

Chain d

60S ribosomal protein L31-A