IL_6QTZ_010

3D structure

PDB id

6QTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GG*UUC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QTZ_010 not in the Motif Atlas

Geometric match to IL_7RQB_058

Geometric discrepancy: 0.3622

The information below is about IL_7RQB_058

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_76488.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

6QTZ|1|A|G|172
6QTZ|1|A|G|173
*
6QTZ|1|A|U|245
6QTZ|1|A|U|246
6QTZ|1|A|C|247

Current chains

Chain A

25S rRNA

Nearby chains

Chain K

60S ribosomal protein L13-A