IL_6QTZ_054

3D structure

PDB id

6QTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6QTZ|1|A|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QTZ_054 not in the Motif Atlas

Homologous match to IL_5TBW_056

Geometric discrepancy: 0.195

The information below is about IL_5TBW_056

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6QTZ|1|A|G|1262
6QTZ|1|A|A|1263
6QTZ|1|A|G|1264
6QTZ|1|A|U|1265
6QTZ|1|A|G|1266
*
6QTZ|1|A|C|1275
6QTZ|1|A|U|1276
6QTZ|1|A|C|1277

Current chains

Chain A

25S rRNA

Nearby chains