3D structure

PDB id
6QTZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CUG*CAUUG
Length
8 nucleotides
Bulged bases
6QTZ|1|A|U|3078, 6QTZ|1|A|U|3079
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6QTZ_120 not in the Motif Atlas
Geometric match to IL_4M4O_001
Geometric discrepancy: 0.2404
The information below is about IL_4M4O_001
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

6QTZ|1|A|C|3063
6QTZ|1|A|U|3064
6QTZ|1|A|G|3065
*
6QTZ|1|A|C|3076
6QTZ|1|A|A|3077
6QTZ|1|A|U|3078
6QTZ|1|A|U|3079
6QTZ|1|A|G|3080

Current chains

Chain A
25S rRNA

Nearby chains

Chain R
60S ribosomal protein L19-A
Chain d
60S ribosomal protein L31-A

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.44 s
Application loaded.