IL_6QTZ_154

3D structure

PDB id

6QTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAGGGUGUAGAAUAAGUGGGAG*CGCCAGUGAAAUACCACUACCUUU

Length

47 nucleotides

Bulged bases

6QTZ|1|A|U|2453, 6QTZ|1|A|U|2455, 6QTZ|1|A|U|2460, 6QTZ|1|A|U|2464, 6QTZ|1|A|G|2466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QTZ|1|A|A|2447
6QTZ|1|A|G|2448
6QTZ|1|A|A|2449
6QTZ|1|A|G|2450
6QTZ|1|A|G|2451
6QTZ|1|A|G|2452
6QTZ|1|A|U|2453
6QTZ|1|A|G|2454
6QTZ|1|A|U|2455
6QTZ|1|A|A|2456
6QTZ|1|A|G|2457
6QTZ|1|A|A|2458
6QTZ|1|A|A|2459
6QTZ|1|A|U|2460
6QTZ|1|A|A|2461
6QTZ|1|A|A|2462
6QTZ|1|A|G|2463
6QTZ|1|A|U|2464
6QTZ|1|A|G|2465
6QTZ|1|A|G|2466
6QTZ|1|A|G|2467
6QTZ|1|A|A|2468
6QTZ|1|A|G|2469
*
6QTZ|1|A|C|2476
6QTZ|1|A|G|2477
6QTZ|1|A|C|2478
6QTZ|1|A|C|2479
6QTZ|1|A|A|2480
6QTZ|1|A|G|2481
6QTZ|1|A|U|2482
6QTZ|1|A|G|2483
6QTZ|1|A|A|2484
6QTZ|1|A|A|2485
6QTZ|1|A|A|2486
6QTZ|1|A|U|2487
6QTZ|1|A|A|2488
6QTZ|1|A|C|2489
6QTZ|1|A|C|2490
6QTZ|1|A|A|2491
6QTZ|1|A|C|2492
6QTZ|1|A|U|2493
6QTZ|1|A|A|2494
6QTZ|1|A|C|2495
6QTZ|1|A|C|2496
6QTZ|1|A|U|2497
6QTZ|1|A|U|2498
6QTZ|1|A|U|2499

Current chains

Chain A

25S rRNA

Nearby chains

Chain p

uL1