IL_6QUL_044

3D structure

PDB id

6QUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6QUL|1|A|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QUL_044 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.0685

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

6QUL|1|A|C|1208
6QUL|1|A|U|1209
6QUL|1|A|G|1210
6QUL|1|A|C|1211
6QUL|1|A|G|1212
6QUL|1|A|A|1213
6QUL|1|A|A|1214
6QUL|1|A|G|1215
*
6QUL|1|A|U|1234
6QUL|1|A|G|1235
6QUL|1|A|G|1236
6QUL|1|A|A|1237
6QUL|1|A|G|1238

Current chains

Chain A

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L20