IL_6QUL_056

3D structure

PDB id

6QUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QUL_056 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.1009

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6QUL|1|A|U|1474
6QUL|1|A|G|1475
6QUL|1|A|U|1476
6QUL|1|A|A|1477
6QUL|1|A|G|1478
*
6QUL|1|A|U|1513
6QUL|1|A|G|1514
6QUL|1|A|A|1515
6QUL|1|A|G|1516
6QUL|1|A|G|1517

Current chains

Chain A

23S rRNA

Nearby chains