IL_6QUL_116

3D structure

PDB id

6QUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QUL_116 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1353

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6QUL|1|A|U|1851
6QUL|1|A|U|1852
6QUL|1|A|A|1853
6QUL|1|A|A|1854
6QUL|1|A|U|1855
6QUL|1|A|U|1856
6QUL|1|A|G|1857
6QUL|1|A|A|1858
6QUL|1|A|U|1859
6QUL|1|A|G|1860
*
6QUL|1|A|U|1882
6QUL|1|A|U|1883
6QUL|1|A|G|1884
6QUL|1|A|A|1885
6QUL|1|A|U|1886
6QUL|1|A|C|1887
6QUL|1|A|G|1888
6QUL|1|A|A|1889
6QUL|1|A|A|1890
6QUL|1|A|G|1891

Current chains

Chain A

23S rRNA

Nearby chains