IL_6QZP_052

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

G(OMG)G*UAAUC

Length

8 nucleotides

Bulged bases

6QZP|1|L5|A|1637, 6QZP|1|L5|A|1638

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QZP_052 not in the Motif Atlas

Homologous match to IL_8C3A_036

Geometric discrepancy: 0.053

The information below is about IL_8C3A_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

6QZP|1|L5|G|1624
6QZP|1|L5|OMG|1625
6QZP|1|L5|G|1626
*
6QZP|1|L5|U|1636
6QZP|1|L5|A|1637
6QZP|1|L5|A|1638
6QZP|1|L5|U|1639
6QZP|1|L5|C|1640

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37