IL_6QZP_055
3D structure
- PDB id
- 6QZP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUCGCAGACCCGACGCCCGCCACG*CG
- Length
- 26 nucleotides
- Bulged bases
- 6QZP|1|L5|A|1699, 6QZP|1|L5|G|1700, 6QZP|1|L5|A|1701, 6QZP|1|L5|C|1707, 6QZP|1|L5|G|1708, 6QZP|1|L5|C|1709, 6QZP|1|L5|C|1714
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QZP_055 not in the Motif Atlas
- Geometric match to IL_7RQB_061
- Geometric discrepancy: 0.3913
- The information below is about IL_7RQB_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52493.1
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
6QZP|1|L5|C|1694
6QZP|1|L5|U|1695
6QZP|1|L5|C|1696
6QZP|1|L5|G|1697
6QZP|1|L5|C|1698
6QZP|1|L5|A|1699
6QZP|1|L5|G|1700
6QZP|1|L5|A|1701
6QZP|1|L5|C|1702
6QZP|1|L5|C|1703
6QZP|1|L5|C|1704
6QZP|1|L5|G|1705
6QZP|1|L5|A|1706
6QZP|1|L5|C|1707
6QZP|1|L5|G|1708
6QZP|1|L5|C|1709
6QZP|1|L5|C|1714
6QZP|1|L5|C|1715
6QZP|1|L5|G|1716
6QZP|1|L5|C|1717
6QZP|1|L5|C|1718
6QZP|1|L5|A|1719
6QZP|1|L5|C|1720
6QZP|1|L5|G|1721
*
6QZP|1|L5|C|1841
6QZP|1|L5|G|1842
Current chains
- Chain L5
- 28S rRNA (3773-MER)
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LF
- 60S ribosomal protein L7
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain Lb
- 60S ribosomal protein L29
Coloring options: