IL_6QZP_070
3D structure
- PDB id
- 6QZP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUG(OMG)CGC
- Length
- 28 nucleotides
- Bulged bases
- 6QZP|1|L5|C|1935, 6QZP|1|L5|A|2041, 6QZP|1|L5|G|2049
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QZP_070 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1486
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6QZP|1|L5|G|1933
6QZP|1|L5|A|1934
6QZP|1|L5|C|1935
6QZP|1|L5|C|1936
6QZP|1|L5|C|1937
6QZP|1|L5|C|1938
6QZP|1|L5|A|1939
6QZP|1|L5|G|1940
6QZP|1|L5|A|1941
6QZP|1|L5|A|1942
6QZP|1|L5|A|1943
6QZP|1|L5|A|1944
*
6QZP|1|L5|U|2038
6QZP|1|L5|G|2039
6QZP|1|L5|A|2040
6QZP|1|L5|A|2041
6QZP|1|L5|A|2042
6QZP|1|L5|A|2043
6QZP|1|L5|U|2044
6QZP|1|L5|G|2045
6QZP|1|L5|G|2046
6QZP|1|L5|A|2047
6QZP|1|L5|U|2048
6QZP|1|L5|G|2049
6QZP|1|L5|OMG|2050
6QZP|1|L5|C|2051
6QZP|1|L5|G|2052
6QZP|1|L5|C|2053
Current chains
- Chain L5
- 28S rRNA (3773-MER)
Nearby chains
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LB
- 60S ribosomal protein L3
- Chain LI
- 60S ribosomal protein L10-like
- Chain LO
- 60S ribosomal protein L13a
- Chain Lf
- 60S ribosomal protein L35a
- Chain Lm
- Ubiquitin-60S ribosomal protein L40
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