IL_6QZP_094

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6QZP|1|L5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QZP_094 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.1132

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6QZP|1|L5|C|2867
6QZP|1|L5|G|2868
6QZP|1|L5|U|2869
6QZP|1|L5|A|2870
6QZP|1|L5|A|2871
6QZP|1|L5|C|2872
*
6QZP|1|L5|G|2877
6QZP|1|L5|G|2878
6QZP|1|L5|A|2879
6QZP|1|L5|U|2880
6QZP|1|L5|A|2881
6QZP|1|L5|A|2882
6QZP|1|L5|G|2883

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA