IL_6QZP_099

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

6QZP|1|L5|A|3663, 6QZP|1|L5|U|3679, 6QZP|1|L5|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QZP_099 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0748

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6QZP|1|L5|C|3660
6QZP|1|L5|G|3661
6QZP|1|L5|A|3662
6QZP|1|L5|A|3663
6QZP|1|L5|G|3664
6QZP|1|L5|G|3665
*
6QZP|1|L5|U|3677
6QZP|1|L5|G|3678
6QZP|1|L5|U|3679
6QZP|1|L5|U|3680
6QZP|1|L5|G|3681
6QZP|1|L5|A|3682
6QZP|1|L5|C|3683
6QZP|1|L5|G|3684

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA