IL_6QZP_176

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GU*ACC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QZP_176 not in the Motif Atlas

Geometric match to IL_4UYK_001

Geometric discrepancy: 0.229

The information below is about IL_4UYK_001

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

6QZP|1|S2|G|123
6QZP|1|S2|U|124
*
6QZP|1|S2|A|339
6QZP|1|S2|C|340
6QZP|1|S2|C|341

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8