IL_6QZP_214
3D structure
- PDB id
- 6QZP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCUAG*CUUGGACC
- Length
- 13 nucleotides
- Bulged bases
- 6QZP|1|S2|G|970
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QZP_214 not in the Motif Atlas
- Homologous match to IL_4V88_434
- Geometric discrepancy: 0.1547
- The information below is about IL_4V88_434
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
6QZP|1|S2|G|952
6QZP|1|S2|C|953
6QZP|1|S2|U|954
6QZP|1|S2|A|955
6QZP|1|S2|G|956
*
6QZP|1|S2|C|967
6QZP|1|S2|U|968
6QZP|1|S2|U|969
6QZP|1|S2|G|970
6QZP|1|S2|G|971
6QZP|1|S2|A|972
6QZP|1|S2|C|973
6QZP|1|S2|C|974
Current chains
- Chain S2
- 18S rRNA (1740-MER)
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain SB
- 40S ribosomal protein S3a
- Chain SO
- 40S ribosomal protein S14
Coloring options: