IL_6QZP_236

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGG*C(5MC)G

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QZP_236 not in the Motif Atlas

Geometric match to IL_5J7L_006

Geometric discrepancy: 0.3224

The information below is about IL_5J7L_006

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_90351.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6QZP|1|S2|C|1363
6QZP|1|S2|U|1364
6QZP|1|S2|G|1365
6QZP|1|S2|G|1366
*
6QZP|1|S2|C|1373
6QZP|1|S2|5MC|1374
6QZP|1|S2|G|1375

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain SR

40S ribosomal protein S17

Chain Sa

40S ribosomal protein S26