3D structure

PDB id
6QZP (explore in PDB, NAKB, or RNA 3D Hub)
Description
High-resolution cryo-EM structure of the human 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CAUGC*GAGG
Length
9 nucleotides
Bulged bases
6QZP|1|S2|U|1397
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6QZP_237 not in the Motif Atlas
Geometric match to IL_6JDV_002
Geometric discrepancy: 0.3589
The information below is about IL_6JDV_002
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_15225.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

6QZP|1|S2|C|1395
6QZP|1|S2|A|1396
6QZP|1|S2|U|1397
6QZP|1|S2|G|1398
6QZP|1|S2|C|1399
*
6QZP|1|S2|G|1447
6QZP|1|S2|A|1448
6QZP|1|S2|G|1449
6QZP|1|S2|G|1450

Current chains

Chain S2
18S rRNA (1740-MER)

Nearby chains

Chain SQ
40S ribosomal protein S16
Chain SR
40S ribosomal protein S17
Chain SU
40S ribosomal protein S20
Chain Sg
Receptor of activated protein C kinase 1

Coloring options:


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