IL_6QZP_246

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

G(OMC)CC*G(UR3)A(6MZ)C

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QZP_246 not in the Motif Atlas

Homologous match to IL_8C3A_471

Geometric discrepancy: 0.101

The information below is about IL_8C3A_471

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

6QZP|1|S2|G|1702
6QZP|1|S2|OMC|1703
6QZP|1|S2|C|1704
6QZP|1|S2|C|1705
*
6QZP|1|S2|G|1829
6QZP|1|S2|UR3|1830
6QZP|1|S2|A|1831
6QZP|1|S2|6MZ|1832
6QZP|1|S2|C|1833

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Ln

60S ribosomal protein L41