3D structure

PDB id
6QZP (explore in PDB, NAKB, or RNA 3D Hub)
Description
High-resolution cryo-EM structure of the human 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
UGAG*CGAA
Length
8 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6QZP_254 not in the Motif Atlas
Homologous match to IL_4V88_471
Geometric discrepancy: 0.1108
The information below is about IL_4V88_471
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.12
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
35

Unit IDs

6QZP|1|S2|U|1733
6QZP|1|S2|G|1734
6QZP|1|S2|A|1735
6QZP|1|S2|G|1736
*
6QZP|1|S2|C|1798
6QZP|1|S2|G|1799
6QZP|1|S2|A|1800
6QZP|1|S2|A|1801

Current chains

Chain S2
18S rRNA (1740-MER)

Nearby chains

Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain LW
60S ribosomal protein L24
Chain SG
40S ribosomal protein S6
Chain SI
40S ribosomal protein S8

Coloring options:


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