IL_6R5Q_012

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GG*CGGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R5Q_012 not in the Motif Atlas

Geometric match to IL_6AZ4_001

Geometric discrepancy: 0.3627

The information below is about IL_6AZ4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69145.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6R5Q|1|5|G|182
6R5Q|1|5|G|189
*
6R5Q|1|5|C|252
6R5Q|1|5|G|253
6R5Q|1|5|G|254
6R5Q|1|5|C|255

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain L

60S ribosomal protein L13

Chain h

uL29

Chain j

Ribosomal protein L37