3D structure

PDB id
6R5Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex (post-state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CCGG*CG
Length
6 nucleotides
Bulged bases
6R5Q|1|5|C|340
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6R5Q_015 not in the Motif Atlas
Geometric match to IL_1U9S_005
Geometric discrepancy: 0.2319
The information below is about IL_1U9S_005
Detailed Annotation
Minor groove platform, major groove intercalation
Broad Annotation
Minor groove platform, major groove intercalation
Motif group
IL_95583.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
11

Unit IDs

6R5Q|1|5|C|339
6R5Q|1|5|C|340
6R5Q|1|5|G|341
6R5Q|1|5|G|342
*
6R5Q|1|8|C|32
6R5Q|1|8|G|33

Current chains

Chain 5
28S ribosomal RNA
Chain 8
5.8S ribosomal RNA

Nearby chains

Chain C
uL4
Chain L
60S ribosomal protein L13
Chain j
Ribosomal protein L37

Coloring options:


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