IL_6R5Q_070

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCC*GAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R5Q_070 not in the Motif Atlas

Geometric match to IL_5TBW_064

Geometric discrepancy: 0.2853

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

6R5Q|1|5|G|1761
6R5Q|1|5|C|1762
6R5Q|1|5|C|1763
*
6R5Q|1|5|G|1769
6R5Q|1|5|A|1770
6R5Q|1|5|U|1771
6R5Q|1|5|C|1772

Current chains

Chain 5

28S ribosomal RNA

Nearby chains