3D structure

PDB id
6R5Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex (post-state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CUGAG*CGAAAG
Length
11 nucleotides
Bulged bases
6R5Q|1|5|A|2512, 6R5Q|1|5|A|2513
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6R5Q_089 not in the Motif Atlas
Homologous match to IL_8C3A_067
Geometric discrepancy: 0.1048
The information below is about IL_8C3A_067
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.4
Basepair signature
cWW-tWH-cWW-L-cWW-tHS
Number of instances in this motif group
15

Unit IDs

6R5Q|1|5|C|2446
6R5Q|1|5|U|2447
6R5Q|1|5|G|2448
6R5Q|1|5|A|2449
6R5Q|1|5|G|2450
*
6R5Q|1|5|C|2509
6R5Q|1|5|G|2510
6R5Q|1|5|A|2511
6R5Q|1|5|A|2512
6R5Q|1|5|A|2513
6R5Q|1|5|G|2514

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain A
uL2
Chain g
eL34
Chain j
Ribosomal protein L37
Chain l
eL39

Coloring options:


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