IL_6R5Q_092

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

6R5Q|1|5|G|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R5Q_092 not in the Motif Atlas

Geometric match to IL_5TBW_145

Geometric discrepancy: 0.2585

The information below is about IL_5TBW_145

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6R5Q|1|5|G|2542
6R5Q|1|5|A|2543
6R5Q|1|5|G|2544
6R5Q|1|5|U|2545
6R5Q|1|5|G|2546
6R5Q|1|5|G|2547
*
6R5Q|1|5|C|2772
6R5Q|1|5|G|2773
6R5Q|1|5|C|2774

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain k

eL38