IL_6R5Q_128

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

6R5Q|1|5|C|4349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R5Q_128 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.2589

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6R5Q|1|5|G|4347
6R5Q|1|5|A|4348
6R5Q|1|5|C|4349
6R5Q|1|5|C|4350
*
6R5Q|1|5|G|4364
6R5Q|1|5|C|4365

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L13

Chain Q

eL18

Chain a

uL15

Chain o

eL42