IL_6R5Q_135

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

6R5Q|1|5|G|4522, 6R5Q|1|5|A|4523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R5Q_135 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.1003

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6R5Q|1|5|C|4456
6R5Q|1|5|U|4457
6R5Q|1|5|C|4458
*
6R5Q|1|5|G|4520
6R5Q|1|5|U|4521
6R5Q|1|5|G|4522
6R5Q|1|5|A|4523
6R5Q|1|5|G|4524

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 1

X-box-binding protein 1

Chain B

uL3

Chain V

eL14