IL_6R5Q_149

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

6R5Q|1|5|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R5Q_149 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2229

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6R5Q|1|5|G|4680
6R5Q|1|5|A|4681
6R5Q|1|5|U|4682
6R5Q|1|5|U|4683
6R5Q|1|5|A|4684
6R5Q|1|5|U|4685
*
6R5Q|1|5|A|4705
6R5Q|1|5|G|4706
6R5Q|1|5|A|4707
6R5Q|1|5|A|4708
6R5Q|1|5|U|4709
6R5Q|1|5|C|4710

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

uL6

Chain O

uL13

Chain m

eL40