IL_6R5Q_184

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUG*UAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R5Q_184 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.2995

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6R5Q|1|K|U|152
6R5Q|1|K|G|153
6R5Q|1|K|U|154
6R5Q|1|K|G|155
*
6R5Q|1|K|U|163
6R5Q|1|K|A|164
6R5Q|1|K|G|165
6R5Q|1|K|A|166

Current chains

Chain K

18S ribosomal RNA

Nearby chains

Chain NN

eS24

Chain W

Ribosomal protein L24

Chain z

40S ribosomal protein S6