IL_6R5Q_224
3D structure
- PDB id
- 6R5Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex (post-state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 6R5Q|1|K|C|1153, 6R5Q|1|K|U|1155, 6R5Q|1|K|G|1157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R5Q_224 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.1614
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6R5Q|1|K|C|1091
6R5Q|1|K|G|1092
6R5Q|1|K|A|1093
*
6R5Q|1|K|U|1152
6R5Q|1|K|C|1153
6R5Q|1|K|U|1154
6R5Q|1|K|U|1155
6R5Q|1|K|U|1156
6R5Q|1|K|G|1157
6R5Q|1|K|G|1158
Current chains
- Chain K
- 18S ribosomal RNA
Nearby chains
- Chain EE
- Ribosomal protein S11
- Chain JJ
- 40S ribosomal protein S27
- Chain QQ
- ribosomal protein uS15
- Chain TT
- Ribosomal protein S15a
- Chain VV
- Ribosomal protein S23
- Chain v
- uS5
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