3D structure

PDB id
6R5Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex (post-state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CUG*CG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6R5Q_243 not in the Motif Atlas
Geometric match to IL_5ML7_009
Geometric discrepancy: 0.237
The information below is about IL_5ML7_009
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_51454.3
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
45

Unit IDs

6R5Q|1|K|C|1363
6R5Q|1|K|U|1364
6R5Q|1|K|G|1365
*
6R5Q|1|K|C|1374
6R5Q|1|K|G|1375

Current chains

Chain K
18S ribosomal RNA

Nearby chains

Chain KK
eS17
Chain LL
eS26

Coloring options:


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