3D structure

PDB id
6R5Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex (post-state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CCG*CAAG
Length
7 nucleotides
Bulged bases
6R5Q|1|K|C|1701, 6R5Q|1|K|A|1835
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6R5Q_251 not in the Motif Atlas
Homologous match to IL_4V88_463
Geometric discrepancy: 0.1844
The information below is about IL_4V88_463
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_61438.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
5

Unit IDs

6R5Q|1|K|C|1700
6R5Q|1|K|C|1701
6R5Q|1|K|G|1702
*
6R5Q|1|K|C|1833
6R5Q|1|K|A|1834
6R5Q|1|K|A|1835
6R5Q|1|K|G|1836

Current chains

Chain K
18S ribosomal RNA

Nearby chains

Chain 2
Transfer RNA; tRNA
Chain 4
mRNA
Chain LL
eS26

Coloring options:


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