IL_6R5Q_266

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCGGUC*GCC

Length

9 nucleotides

Bulged bases

6R5Q|1|5|C|481|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R5Q_266 not in the Motif Atlas

Geometric match to IL_5AOX_001

Geometric discrepancy: 0.2297

The information below is about IL_5AOX_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6R5Q|1|5|G|481
6R5Q|1|5|C|481|||A
6R5Q|1|5|G|482
6R5Q|1|5|G|483
6R5Q|1|5|U|484
6R5Q|1|5|C|485
*
6R5Q|1|5|G|671
6R5Q|1|5|C|672
6R5Q|1|5|C|673

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain r

eL28