IL_6R5Q_268
3D structure
- PDB id
- 6R5Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex (post-state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAAGGUGG*UGUUACAGC
- Length
- 17 nucleotides
- Bulged bases
- 6R5Q|1|5|G|748, 6R5Q|1|5|U|914, 6R5Q|1|5|C|916
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R5Q_268 not in the Motif Atlas
- Geometric match to IL_8C3A_022
- Geometric discrepancy: 0.268
- The information below is about IL_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07703.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6R5Q|1|5|G|745
6R5Q|1|5|A|746
6R5Q|1|5|A|747
6R5Q|1|5|G|748
6R5Q|1|5|G|749
6R5Q|1|5|U|750
6R5Q|1|5|G|751
6R5Q|1|5|G|752
*
6R5Q|1|5|U|911
6R5Q|1|5|G|912
6R5Q|1|5|U|913
6R5Q|1|5|U|914
6R5Q|1|5|A|915
6R5Q|1|5|C|916
6R5Q|1|5|A|917
6R5Q|1|5|G|918
6R5Q|1|5|C|919
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain M
- Ribosomal protein L14
- Chain S
- eL20
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