IL_6R5Q_287
3D structure
- PDB id
- 6R5Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex (post-state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GACAGGAUUG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 6R5Q|1|K|G|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R5Q_287 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.2869
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6R5Q|1|K|G|1281
6R5Q|1|K|A|1282
6R5Q|1|K|C|1283
6R5Q|1|K|A|1284
6R5Q|1|K|G|1285
6R5Q|1|K|G|1286
6R5Q|1|K|A|1287
6R5Q|1|K|U|1288
6R5Q|1|K|U|1289
6R5Q|1|K|G|1290
*
6R5Q|1|K|C|1309
6R5Q|1|K|U|1310
6R5Q|1|K|C|1311
6R5Q|1|K|G|1312
6R5Q|1|K|A|1313
6R5Q|1|K|U|1314
6R5Q|1|K|U|1315
6R5Q|1|K|C|1316
Current chains
- Chain K
- 18S ribosomal RNA
Nearby chains
- Chain 0
- eS31
- Chain 9
- uS14
- Chain RR
- 40S ribosomal protein S12
- Chain SS
- eS10
Coloring options: