IL_6R6G_007

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

6R6G|1|5|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_007 not in the Motif Atlas

Geometric match to IL_6CZR_119

Geometric discrepancy: 0.2345

The information below is about IL_6CZR_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_33761.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6R6G|1|5|C|118
6R6G|1|5|G|119
6R6G|1|5|A|120
6R6G|1|5|A|121
*
6R6G|1|5|U|152
6R6G|1|5|G|153

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain G

eL8

Chain N

Ribosomal protein L15

Chain h

uL29