IL_6R6G_026

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

6R6G|1|5|G|542, 6R6G|1|5|A|543, 6R6G|1|5|C|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_026 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2278

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

6R6G|1|5|G|482
6R6G|1|5|G|483
*
6R6G|1|5|C|541
6R6G|1|5|G|542
6R6G|1|5|A|543
6R6G|1|5|C|544
6R6G|1|5|C|545

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain Q

eL18

Chain r

eL28