IL_6R6G_048
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GGAUC*GCGCAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R6G_048 not in the Motif Atlas
- Geometric match to IL_4V9F_018
- Geometric discrepancy: 0.3127
- The information below is about IL_4V9F_018
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_97631.1
- Basepair signature
- cWW-L-R-L-R-L-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
6R6G|1|5|G|986
6R6G|1|5|G|987
6R6G|1|5|A|988
6R6G|1|5|U|989
6R6G|1|5|C|990
*
6R6G|1|5|G|1015
6R6G|1|5|C|1016
6R6G|1|5|G|1017
6R6G|1|5|C|1018
6R6G|1|5|A|1019
6R6G|1|5|C|1020
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain Q
- eL18
- Chain b
- eL29
Coloring options: