3D structure

PDB id
6R6G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GGAUC*GCGCAC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6R6G_048 not in the Motif Atlas
Geometric match to IL_4V9F_018
Geometric discrepancy: 0.3127
The information below is about IL_4V9F_018
Detailed Annotation
Triple sheared related
Broad Annotation
Triple sheared
Motif group
IL_97631.1
Basepair signature
cWW-L-R-L-R-L-tHS-cWW
Number of instances in this motif group
1

Unit IDs

6R6G|1|5|G|986
6R6G|1|5|G|987
6R6G|1|5|A|988
6R6G|1|5|U|989
6R6G|1|5|C|990
*
6R6G|1|5|G|1015
6R6G|1|5|C|1016
6R6G|1|5|G|1017
6R6G|1|5|C|1018
6R6G|1|5|A|1019
6R6G|1|5|C|1020

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain Q
eL18
Chain b
eL29

Coloring options:


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