IL_6R6G_049

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_049 not in the Motif Atlas

Geometric match to IL_4WF9_087

Geometric discrepancy: 0.2657

The information below is about IL_4WF9_087

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6R6G|1|5|C|992
6R6G|1|5|G|993
6R6G|1|5|A|994
6R6G|1|5|G|995
*
6R6G|1|5|C|1010
6R6G|1|5|G|1011
6R6G|1|5|A|1012
6R6G|1|5|G|1013

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain Q

eL18