IL_6R6G_053
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6R6G|1|5|A|1210, 6R6G|1|5|G|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R6G_053 not in the Motif Atlas
- Homologous match to IL_8C3A_030
- Geometric discrepancy: 0.1342
- The information below is about IL_8C3A_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6R6G|1|5|G|1082
6R6G|1|5|A|1083
6R6G|1|5|A|1084
6R6G|1|5|A|1085
6R6G|1|5|G|1086
*
6R6G|1|5|C|1208
6R6G|1|5|U|1209
6R6G|1|5|A|1210
6R6G|1|5|G|1211
6R6G|1|5|U|1212
6R6G|1|5|A|1213
6R6G|1|5|G|1214
6R6G|1|5|C|1215
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain C
- uL4
- Chain L
- 60S ribosomal protein L13
- Chain N
- Ribosomal protein L15
- Chain a
- uL15
- Chain j
- Ribosomal protein L37
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