IL_6R6G_068

3D structure

PDB id

6R6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex with SRP.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUCU*AC

Length

6 nucleotides

Bulged bases

6R6G|1|5|C|1292

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6R6G_068 not in the Motif Atlas

Geometric match to IL_4YAZ_007

Geometric discrepancy: 0.2392

The information below is about IL_4YAZ_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

6R6G|1|5|G|1290
6R6G|1|5|U|1291
6R6G|1|5|C|1292
6R6G|1|5|U|1293
*
6R6G|1|5|A|1313
6R6G|1|5|C|1314

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain J

Ribosomal protein L11