IL_6R6G_079
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 6R6G|1|5|C|1472, 6R6G|1|5|A|1578, 6R6G|1|5|U|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R6G_079 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1716
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6R6G|1|5|G|1470
6R6G|1|5|A|1471
6R6G|1|5|C|1472
6R6G|1|5|C|1473
6R6G|1|5|C|1474
6R6G|1|5|C|1475
6R6G|1|5|A|1476
6R6G|1|5|G|1477
6R6G|1|5|A|1478
6R6G|1|5|A|1479
6R6G|1|5|A|1480
6R6G|1|5|A|1481
*
6R6G|1|5|U|1575
6R6G|1|5|G|1576
6R6G|1|5|A|1577
6R6G|1|5|A|1578
6R6G|1|5|A|1579
6R6G|1|5|A|1580
6R6G|1|5|U|1581
6R6G|1|5|G|1582
6R6G|1|5|G|1583
6R6G|1|5|A|1584
6R6G|1|5|U|1585
6R6G|1|5|G|1586
6R6G|1|5|G|1587
6R6G|1|5|C|1588
6R6G|1|5|G|1589
6R6G|1|5|C|1590
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain B
- uL3
- Chain I
- Ribosomal protein L10 (Predicted)
- Chain O
- 60S ribosomal protein L13a
- Chain f
- eL33
- Chain m
- 60S ribosomal protein L40
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